I. Roterman: search on Z-Library

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1

Why do Congo Red, Evans Blue, and Trypan Blue differ in their complexation properties?

Skowronek, M., Roterman, I., Konieczny, L., Stopa, B., Rybarska, J., Piekarska, B.

Journal:

Journal of Computational Chemistry

Year:

2000

Language:

english

File:

PDF, 530 KB

english, 2000

2

Force-field parametrization and molecular dynamics simulations of Congo red

Marcin Król, Tomasz Borowski, Irena Roterman, Barbara Piekarska, Barbara Stopa, Joanna Rybarska, Leszek Konieczny

Journal:

Journal of Computer-Aided Molecular Design

Year:

2004

Language:

english

File:

PDF, 284 KB

english, 2004

3

Development of polymorphic microsatellite loci for three species of vent-endemic megafauna from deep-sea hydrothermal vents in the Scotia Sea, Southern Ocean

C. N. Roterman, J. T. Copley, K. T. Linse, P. A. Tyler…

Journal:

Conservation Genetics Resources

Year:

2013

Language:

english

File:

PDF, 155 KB

english, 2013

4

A Comparison of the CHARMM, AMBER and ECEPP Potentials for Peptides. II. φ-ψ Maps for N-Acetyl Alanine N′-Methyl Amide: Comparisons, Contrasts and Simple Experimental Tests

Roterman, I. K., Lambert, M. H., Gibson, K. D., Scheraga, H. A.

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

1989

Language:

english

File:

PDF, 2.12 MB

english, 1989

5

A Comparison of the CHARMM, AMBER and ECEPP Potentials for Peptides. I. Conformational Predictions for the Tandemly Repeated Peptide (Asn-Ala-Asn-Pro) 9

Roterman, I. K., Gibson, K. D., Scheraga, H. A.

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

1989

Language:

english

File:

PDF, 1.55 MB

english, 1989

6

Chaperonin Structure - The Large Multi-Subunit Protein Complex

Banach, Mateusz, Stąpor, Katarzyna, Roterman, Irena

Journal:

International Journal of Molecular Sciences

Year:

2009

Language:

english

File:

PDF, 519 KB

english, 2009

7

Self-Assembled Molecules – New Kind of Protein Ligands || Supramolecular Systems as Protein Ligands

Roterman, Irena, Konieczny, Leszek

Year:

2018

Language:

english

File:

PDF, 1.31 MB

english, 2018

8

Self-assembly of Congo Red—A theoretical and experimental approach to identify its supramolecular organization in water and salt solutions

M. Skowronek, B. Stopa, L. Konieczny, J. Rybarska, B. Piekarska, E. Szneler, G. Bakalarski, I. Roterman

Journal:

Year:

1998

Language:

english

File:

PDF, 372 KB

english, 1998

9

Heat-induced formation of a specific binding site for self-assembled congo red in the V domain of immunoglobulin L chain λ

B. Piekarska, L. Konieczny, J. Rybarska, B. Stopa, G. Zemanek, E. Szneler, M. Król, M. Nowak, I. Roterman

Journal:

Year:

2001

Language:

english

File:

PDF, 287 KB

english, 2001

10

Local and long-range structural effects caused by the removal of the N-terminal polypeptide fragment from immunoglobulin L chain λ

Marcin Król, Irena Roterman, Barbara Piekarska, Leszek Konieczny, Janina Rybarska, Barbara Stopa

Journal:

Year:

2003

Language:

english

File:

PDF, 416 KB

english, 2003

11

An approach to understand the complexation of supramolecular dye Congo red with immunoglobulin L chain λ

Marcin Król, Irena Roterman, Barbara Piekarska, Leszek Konieczny, Janina Rybarska, Barbara Stopa, Paweł Spólnik, Edward Szneler

Journal:

Year:

2005

Language:

english

File:

PDF, 265 KB

english, 2005

12

Modelling the Optimal Simulation Path in the Peptide Chain Folding–Studies Based on Geometry of Alanine Heptapeptide.

Journal:

Journal of Theoretical Biology

Year:

1995

Language:

english

File:

PDF, 409 KB

english, 1995

13

Geometrical analysis of structural changes in immunoglobulin domains' transition from native to molten state

I. Roterman, L. Konieczny

Journal:

Computers & Chemistry

Year:

1995

Language:

english

File:

PDF, 466 KB

english, 1995

14

Hydrophobic collapse in (in silico) protein folding

Michal Brylinski, Leszek Konieczny, Irena Roterman

Journal:

Computational Biology and Chemistry

Year:

2006

Language:

english

File:

PDF, 1.38 MB

english, 2006

15

Conservative secondary structure motifs already present in early-stage folding (in silico) as found in serpines family

Michal Brylinski, Leszek Konieczny, Andrzej Kononowicz, Irena Roterman

Journal:

Journal of Theoretical Biology

Year:

2008

Language:

english

File:

PDF, 1.12 MB

english, 2008

16

Congo Red bound to α-1-proteinase inhibitor as a model of supramolecular ligand and protein complex

I. Roterman, J. Rybarska, L. Konieczny, M. Skowronek, B. Stopa, B. Piekarska, G. Bakalarski

Journal:

Computers & Chemistry

Year:

1998

Language:

english

File:

PDF, 1.05 MB

english, 1998

17

The conformational characteristics of Congo red, Evans blue and Trypan blue

M. Skowronek, I. Roterman, L. Konieczny, B. Stopa, J. Rybarska, B. Piekarska, A. Górecki, M. Król

Journal:

Computers & Chemistry

Year:

2000

Language:

english

File:

PDF, 400 KB

english, 2000

18

Conformational subspace in simulation of early-stage protein folding

Wiktor Jurkowski, Michał Brylinski, Leszek Konieczny, Zdzisław Wiíniowski, Irena Roterman

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2004

Language:

english

File:

PDF, 830 KB

english, 2004

19

Analysis of correlated domain motions in IgG light chain reveals possible mechanisms of immunological signal transduction

Marcin Król, Irena Roterman, Barbara Piekarska, Leszek Konieczny, Janina Rybarska, Barbara Stopa, Paweł Spólnik

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2005

Language:

english

File:

PDF, 340 KB

english, 2005

20

Application of the fuzzy-oil-drop model to membrane protein simulation

Veronica Zobnina, Irena Roterman

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2009

Language:

english

File:

PDF, 1.25 MB

english, 2009

21

Globular proteins, GU wobbling, and the evolution of the genetic code

Jerzy Jurka, Zofia Kołosza, Irena Roterman

Journal:

Journal of Molecular Evolution

Year:

1982

Language:

english

File:

PDF, 671 KB

english, 1982

22

The use of the Congo red-related dye DBACR to recognize the heavy chain-derived abnormality of myeloma immunoglobulins

Paweł Spólnik, Leszek Konieczny, Barbara Piekarska, Janina Rybarska, Barbara Stopa, Grzegorz Zemanek, Anna Drozd, Marcin Król, Irena Roterman, Teresa Wolska-Smoleń, Aleksander B. Skotnicki

Journal:

Archivum Immunologiae et Therapiae Experimentalis

Year:

2006

Language:

english

File:

PDF, 814 KB

english, 2006

23

Influence of the electric field on supramolecular structure and properties of amyloid-specific reagent Congo red

Paweł Spólnik, Marcin Król, Barbara Stopa, Leszek Konieczny, Barbara Piekarska, Janina Rybarska, Grzegorz Zemanek, Anna Jagusiak, Piotr Piwowar, Grzegorz Szoniec, Irena Roterman

Journal:

European Biophysics Journal

Year:

2011

Language:

english

File:

PDF, 1.88 MB

english, 2011

24

Localization of ligand binding site in proteins identifiedin silico

Michal Brylinski, Marek Kochanczyk, Elzbieta Broniatowska, Irena Roterman

Journal:

Journal of Molecular Modeling

Year:

2007

Language:

english

File:

PDF, 794 KB

english, 2007

25

“Fuzzy oil drop” model applied to individual small proteins built of 70 amino acids

Katarzyna Prymula, Kinga Sałapa, Irena Roterman

Journal:

Journal of Molecular Modeling

Year:

2010

Language:

english

File:

PDF, 824 KB

english, 2010

26

Fuzzy oil drop model to interpret the structure of antifreeze proteins and their mutants

Mateusz Banach, Katarzyna Prymula, Wiktor Jurkowski, Leszek Konieczny, Irena Roterman

Journal:

Journal of Molecular Modeling

Year:

2012

Language:

english

File:

PDF, 461 KB

english, 2012

27

Catalytic residues in hydrolases: analysis of methods designed for ligand-binding site prediction

Katarzyna Prymula, Tomasz Jadczyk, Irena Roterman

Journal:

Journal of Computer-Aided Molecular Design

Year:

2011

Language:

english

File:

PDF, 664 KB

english, 2011

28

Color image coding using regional correlation of primary colors

Yalon Roterman, Moshe Porat

Journal:

Image and Vision Computing

Year:

2007

Language:

english

File:

PDF, 2.64 MB

english, 2007

29

Two-intermediate model to characterize the structure of fast-folding proteins

I. Roterman, L. Konieczny, W. Jurkowski, K. Prymula, M. Banach

Journal:

Journal of Theoretical Biology

Year:

2011

Language:

english

File:

PDF, 1.64 MB

english, 2011

30

An improved protein fold recognition with support vector machines

Wiesław Chmielnicki, Irena Roterman-Konieczna, Katarzyna Stąpor

Journal:

Year:

2012

Language:

english

File:

PDF, 283 KB

english, 2012

31

The Indirect Generation of Long-distance Structural Changes in Antibodies upon their Binding to Antigen

Barbara Piekarska, Anna Drozd, Leszek Konieczny, Marcin Król, Wiktor Jurkowski, Irena Roterman, Paweł Spólnik, Barbara Stopa, Janina Rybarska

Journal:

Chemical Biology & Drug Design

Year:

2006

Language:

english

File:

PDF, 254 KB

english, 2006

32

Research Article: The Use of Rigid, Fibrillar Congo Red Nanostructures for Scaffolding Protein Assemblies and Inducing the Formation of Amyloid-like Arrangement of Molecules

Paweł Spólnik, Barbara Stopa, Barbara Piekarska, Anna Jagusiak, Leszek Konieczny, Janina Rybarska, Marcin Król, Irena Roterman, Barbara Urbanowicz, Janina Zięba-Palus

Journal:

Chemical Biology & Drug Design

Year:

2007

Language:

english

File:

PDF, 715 KB

english, 2007

33

Formation of amyloid-like aggregates through the attachment of protein molecules to a Congo red scaffolding framework ordered under the influence of an electric field

Barbara Stopa, Barbara Piekarska, Leszek Konieczny, Marcin Król, Janina Rybarska, Anna Jagusiak, Paweł Spólnik, Irena Roterman, Barbara Urbanowicz, Piotr Piwowar, Krzysztof Lewiński

Journal:

Central European Journal of Chemistry

Year:

2010

Language:

english

File:

PDF, 2.55 MB

english, 2010

34

Congo red-stabilized intermediates in the λ light chain transition from native to molten state

B. Pierkarska, M. Skowronek, J. Rybarska, B. Stopa, I. Roterman, L. Konieczny

Journal:

Year:

1996

Language:

english

File:

PDF, 1.06 MB

english, 1996

35

The geometrical analysis of peptide backbone structure and its local deformations

Journal:

Year:

1995

Language:

english

File:

PDF, 1.26 MB

english, 1995

36

Instability of monoclonal myeloma protein may be identified as susceptibility to penetration and binding by newly synthesized Congo red derivatives

Paweł Spólnik, Leszek Konieczny, Barbara Piekarska, Janina Rybarska, Barbara Stopa, Grzegorz Zemanek, Marcin Król, Irena Roterman

Journal:

Year:

2004

Language:

english

File:

PDF, 356 KB

english, 2004

37

Hydrophobic collapse in late-stage folding (in silico) of bovine pancreatic trypsin inhibitor

Michal Brylinski, Leszek Konieczny, Irena Roterman

Journal:

Year:

2006

Language:

english

File:

PDF, 525 KB

english, 2006

38

Albumin binds self-assembling dyes as specific polymolecular ligands

Barbara Stopa, Janina Rybarska, Anna Drozd, Leszek Konieczny, Marcin Król, Marek Lisowski, Barbara Piekarska, Irena Roterman, Paweł Spólnik, Grzegorz Zemanek

Journal:

International Journal of Biological Macromolecules

Year:

2006

Language:

english

File:

PDF, 657 KB

english, 2006

39

Effect of self association of bis-ANS and bis-azo dyes on protein binding

B. Stopa, L. Konieczny, B. Piekarska, I. Roterman, J. Rybarska, M. Skowronek

Journal:

Year:

1997

Language:

english

File:

PDF, 438 KB

english, 1997

40

Supramolecular ligands: Monomer structure and protein ligation capability

Barbara Stopa, Magdalena Górny, Leszek Konieczny, Barbara Piekarska, Janina Rybarska, Marek Skowronek, Irena Roterman

Journal:

Year:

1998

Language:

english

File:

PDF, 584 KB

english, 1998

41

Hydrophobic core in domains of immunoglobulin-like fold

Banach, M., Roterman, I., Prudhomme, N., Chomilier, J.

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

2014

Language:

english

File:

PDF, 653 KB

english, 2014

42

[Focus on Structural Biology] Identification of Ligand Binding Site and Protein-Protein Interaction Area Volume 8 ||

Roterman-Konieczna, Irena

Year:

2013

Language:

english

File:

PDF, 5.91 MB

english, 2013

43

Systems Biology ||

Konieczny, Leszek, Roterman-Konieczna, Irena, Spólnik, Paweł

Year:

2014

Language:

english

File:

PDF, 18.05 MB

english, 2014

44

[Focus on Structural Biology] Identification of Ligand Binding Site and Protein-Protein Interaction Area Volume 8 || Docking Predictions of Protein-Protein Interactions and Their Assessment: The CAPRI Experiment

Roterman-Konieczna, Irena

Year:

2013

Language:

english

File:

PDF, 457 KB

english, 2013

45

Hydrophobic core formation in protein complex of cathepsin

Piwowar, Monika, Banach, Mateusz, Konieczny, Leszek, Roterman, Irena

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

2014

Language:

english

File:

PDF, 871 KB

english, 2014

46

Structural role of exon-coded fragment of polypeptide chains in selected enzymes

Piwowar, Monika, Banach, Mateusz, Konieczny, Leszek, Roterman, Irena

Journal:

Journal of Theoretical Biology

Year:

2013

Language:

english

File:

PDF, 1.15 MB

english, 2013

47

Lysozyme Folded In Silico According to the Limited Conformational Sub-space

Jurkowski, W., Bryliński, M., Konieczny, L., Roterman, I.

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

2004

Language:

english

File:

PDF, 862 KB

english, 2004

48

The Increased Flexibility of CDR Loops Generated in Antibodies by Congo Red Complexation Favors Antigen Binding

Król, Marcin, Roterman, Irena, Drozd, Anna, Konieczny, Leszek, Piekarska, Barbara, Rybarska, Janina, Spólnik, Paweł, Stopa, Barbara

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

2006

Language:

english

File:

PDF, 1.32 MB

english, 2006

49

Fuzzy-Oil-Drop Hydrophobic Force Field—A Model to Represent Late-stage Folding (In Silico ) of Lysozyme

Brylinski, Michal, Konieczny, Leszek, Roterman, Irena

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

2006

Language:

english

File:

PDF, 967 KB

english, 2006

50

Geometric Parameters Defining the Structure of Proteins—Relation to Early-Stage Folding Step

Jurkowski, W., Kulaga, T., Roterman, I.

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

2011

Language:

english

File:

PDF, 13.71 MB

english, 2011